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Data set used for training and evaluation of EffectorP 3.0

All data sets that were used for training and testing of EffectorP 3.0 can be found here.

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Data set used for training of EffectorP 1.0 and 2.0

The positive training set (experimentally verified fungal effectors) that was used for training EffectorP 1.0 can be found here: Fungal effector FASTA file.

The positive training set (experimentally verified fungal effectors) that was used for training EffectorP 2.0 can be found here: Fungal effector FASTA file.

The validation set (experimentally verified fungal effectors) that was used for testing EffectorP 2.0 can be found here: Fungal effector FASTA file.

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Data set used for validation of EffectorP 2.0

The set of 24,432 fungal saprophyte secreted proteins: FASTA file.

The set of 2,631 fungal, plant and mammalian proteins with signal peptides: FASTA file.

The set of 938 fungal proteins with unaffected pathogenicity phenotype: FASTA file.

The combined set of effector candidates from expression data sets of early infection: FASTA file.

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Contact

For comments and suggestions regarding the effector training set please contact jana.sperschneider@csiro.au